How the Central Dogma of Molecular Biology Points to Design

February 9, 2015

From time to time, biochemists make discoveries that change the way we think about how life works. In a recent paper, Ian S. Dunn, a researcher at CytoCure, argues that biomolecules (such as DNA, RNA, and proteins) comprised of “molecular alphabets” (such as nucleotides and amino acids) are a universal requirement for life.1

Dunn’s work has far reaching implications. Perhaps the most significant relates to thecentral dogma of molecular biology (the organizing framework for biochemistry). First proposed by Francis Crick in 1956, the central dogma states that biochemical information flows from DNA through RNA to proteins.

The RNA world hypothesis, a leading evolutionary explanation for life’s origin, supposes that the central dogma of molecular biology is an unintended outcome of chemical evolution. This hypothesis posits that initial biochemistry was built exclusively around RNA and only later did evolutionary processes transform the RNA world into the familiar DNA-protein world of contemporary organisms. Thus, the DNA-protein world is merely an accident, the contingent outcome of evolutionary history.

Origin-of-life researchers claimed support for the RNA world with the discovery ofribozymes in the 1980s. These RNA molecules possess functional capabilities. In other words, RNA not only harbors information like DNA, it also carries out cellular functions like proteins. Researchers presumed that RNA biochemistry’s dual capabilities later apportioned between DNA (information storage) and proteins (function). Origin-of-life researchers often point to RNA’s intermediary role in the central dogma of molecular biology as further evidence for the RNA world hypothesis. In this view, RNA’s reduced role is a vestige of evolutionary history and RNA is viewed as a sort of molecular fossil.

However, if Dunn is correct and molecular alphabets are a universal requirement for life, it follows that the central dogma of molecular biology cannot be an accidental outcome of chemical evolution—a commonplace assumption on the part of many life scientists. Instead, it seems to be more appropriate to view this process as part of the Creator’s well-planned design.

Chemical Complexity and Life

Chemical complexity is a defining feature of life. In fact, the cellular operations fundamental to biology require chemical complexity. According to Dunn, this complexity can be achieved only through a large ensemble of macromolecules, each one carrying out a specific task in the cell. However, the macromolecules must be assembled from molecular alphabets because only molecular alphabets allow for the plethora of combinatorial possibilities needed to give macromolecules the range of structural variability that makes possible the functional diversity required for life.

Proteins help illustrate Dunn’s point regarding combinatorial potential. Built from an alphabet that consists of 20 different amino acids, proteins are the workhorses of life. Each protein carries out a specific role in the cell. A typical protein might consist of 300 amino acids. So, for a protein of that size, the number of possible amino acid sequences is (20)300. Each sequence has the potential to form a distinct structure and, consequently, perform a distinct function. It is impossible to achieve this kind of complexity using small molecules or uniquely specified macromolecules.

Two Types of Molecular Alphabets

Another defining feature of life is its ability to replicate. For a cell to reproduce it must duplicate the information that specifies the functional macromolecules’ alphabet sequences and then pass it on to the daughter cells. Based on this requirement, Dunn identifies a need for primary and secondary molecular alphabets.

Macromolecules comprised of a primary molecular alphabet must be able to replicate themselves. This requirement, however, places constraints on the macromolecules, preventing them from being able to carry out the full range of functional activities needed to support the chemical complexity required for life. A secondary alphabet is needed to overcome this restriction. Specified by the primary alphabet, the secondary alphabet possesses the full range of functional possibilities because it is not constrained by the need to replicate.

DNA harbors the information a cell’s machinery needs to produce proteins and also possesses the ability to replicate. Therefore, DNA’s nucleotide sequence serves as a primary molecular alphabet while proteins’ amino acid sequences comprise a secondary molecular alphabet, enabling proteins to serve as the cell’s workhorse molecules.

Molecular Alphabets and the Central Dogma of Molecular Biology

According to the central dogma of molecular biology, the information stored in DNA is functionally expressed through the amino acid sequence and protein activity. When it is time for the cell’s machinery to produce a particular protein, it copies the appropriate information from the DNA alphabet and produces a molecule calledmessenger RNA (mRNA). Once assembled, mRNA migrates to the ribosome and directs the synthesis of proteins.

In effect, the central dogma embodies the roles assumed by the primary and secondary molecular alphabets. Information in the cell’s primary molecular alphabet (DNA) is constrained by the need to replicate and so specifies the production of the cell’s secondary molecular alphabet (proteins) with the maximal amount of functional diversity. The translation from primary to secondary alphabet requires a decoding apparatus, which in the cell is comprised of RNA and ribosomes.

The key point is that the central dogma appears to be a fundamental requirement for life—a universal property, a necessary embodiment of life’s requisite chemical complexity. In this sense, it is reasonable to view the central dogma of molecular biology as part of the elegant, sophisticated, well-designed processes characteristic of biochemistry. Conversely, the central dogma of molecular biology can no longer be viewed as an accidental outcome of chemical evolution.

Undermining the RNA World Hypothesis

In the RNA world, the molecular alphabet that comprises RNA is a primary alphabet. But based on Dunn’s work, RNA would also have been constrained in its range of functional capabilities because of its need to replicate. Because of this restriction, the ribozymes of the RNA world cannot provide the chemical complexity necessary to sustain life. Dunn’s insight into the universal character of molecular alphabets unwittingly undercuts the RNA world scenario. Thus, it seems the central dogma of molecular biology (from DNA to RNA to proteins) had to be in place at the point that life originated.

Subjects: Biochemical Design

Dr. Fazale Rana

In 1999, I left my position in R&D at a Fortune 500 company to join Reasons to Believe because I felt the most important thing I could do as a scientist is to communicate to skeptics and believers alike the powerful scientific evidence—evidence that is being uncovered day after day—for God’s existence and the reliability of Scripture. Read more about Dr. Fazale Rana

References:

  1. Ian S. Dunn, “Are Molecular Alphabets Universal Enabling Factors for the Evolution of Complex Life?,” Origins of Life and Evolution of Biospheres 43 (December 2013): 445–64.
Posted in Uncategorized | Leave a comment

GOD EQUATIONS

*** By Will Myers

The universe alone with the human design has order. All things that exist was predestined by God at the time of creation. The human mind interfaced with the universal environment behaves economically (This implies a specific order). The paradigm is the same for each human with varying parameter values that are part of the human paradigm. For example: minimum used energy for maximum results; seeking how to function in life and function most efficiently. This includes one’s sex life…insuring against lost in the future. Our sub-conscientious mind works involuntarily constant for subject to live most economically in the physical and spiritual sense with joy and happiness a priority.  Insanity is acting contrary to the economics of the mind.

Scripture says that the fear of God is the beginning of wisdom. This would be insuring against future lost. Below are equations and definitions describing our metaphysical states.  Truly, God placed His perfect righteousness into creation. If He had not, than all would be random without logic  or form.

The Word of God is the most practical, economical source for to live life abundantly, not to mention the supernatural life potential.

“Therefore thus saith the Lord God, Behold, I lay in Zion (meaning “in the essence of things”)  for a foundation a stone, a tried stone, a precious corner stone, a sure foundation: he that believeth shall not make haste.”  Zion in old Hebrew mean “in the essence of things.”

Romans 1:20

For the invisible things of him from the creation of the world are clearly seen, being understood by the things that are made, even his eternal power and Godhead; so that they are without excuse:
<
But when the Comforter is come, whom I will send unto you from the Father, even the Spirit of truth, which proceedeth from the Father, he shall testify of me:
<
UspaceVspace=Q; Uspace meaning the perfect righteousness of God giving perfect order to all things. Vspace is the nexuses of all things. The Q is the resulting thing, tangible or intangible; thing that IS.
<
Please right click diagram and open in another window:
god-equation-jesus-100-2-5-15-3b Enlarged

God Equations Eixtence and Observer 3

Posted in Uncategorized | 1 Comment

Q&A: Where Does Speciation Fit in Creation?

From David—South Korea

Thank you for your question, David. We do believe that God, through His miraculous interventions, created various species during the creation week. The term “speciation” has at least sixteen different definitions in the scientific literature. Some of these definitions are so narrow that certain breeds of dogs and gray parrots would qualify as separate species. So, RTB’s understanding of speciation is based on the Hebrew word mîn, which means “biological kind.”

Specific texts within Scripture argue for a narrow definition of mîn. For example, the book of Leviticus 19:19 implies that different mîn can mate, but then states that “different kinds of animals” should not mate. In both Leviticus 11:13–18 andDeuteronomy 14:11–18 the horned owl, screech owl, little owl, great owl, and white owl are all referred to as separate mîn. Only these kinds of owls are described as “unclean,” while eating “any kind” of raven or hawk is declared unclean (emphasis added). Therefore, at least for birds, the definition of mîn appears roughly analogous to “species.” Also, in Leviticus 11:22, the text states “any kind of locust, katydid, cricket or grasshopper” as separate mîn. In this passage the definition of mîn may have a meaning as broad as a genus.

What all this implies concerning God’s direct involvement in speciation is that God frequently intervened throughout the creation days to design new kinds of life. However, He created each new species with a built-in ability to adapt to changing environments. Because definitions of “species” are so varied and broad, many so-called speciation events may merely be examples of adaptation.

How does one know the difference between what is a miraculous speciation event and what is an example of adaptation? Biblically speaking, we can start by determining when the life-form in question appeared. Did it appear before or during the human era? Genesis 1 and 2 tell us God ceased creating new kinds life on the seventh day. Thus, during the human era only natural processes will occur in evolutionary biology. Before the human era (the six creation days), evolutionary biology will feature a combination of both natural and supernatural processes.

You can find a more detailed explanation of RTB’s perspective on speciation in my book Navigating Genesis.

Dr. Hugh Ross

Reasons to Believe emerged from my passion to research, develop, and proclaim the most powerful new reasons to believe in Christ as Creator, Lord, and Savior and to use those new reasons to reach people for Christ. Read more about Dr. Hugh Ross.

 

Posted in Uncategorized | Leave a comment

GOD PLACED HIS PERFECTION IN THE ESSENCE OF THINGS WHICH DIRECTED THE GENESIS OF MAN’S KNOWLEDGE

Will Myers's avatarIntelligent Design and Biblical Scripture

Isaiah 28:16 Therefore thus saith the Lord God, Behold, I lay in Zion for a foundation a stone, a tried stone, a precious corner stone, a sure foundation: he that believeth shall not make haste (Zion mean “in the essence of things”).

Romans 1:20 For the invisible things of him from the creation of the world are clearly seen, being understood by the things that are made, even his eternal power and Godhead; so that they are without excuse:

Refer to prior articles: UspaceVspace product=QV(The way God made things to work; laws and principles). Each and everything of a human is in this form. The mind is a potentiality (Gives probabilities) of the brain which facilitates for routine functions.

Matthew 6:33 But seek ye first the kingdom of God, and his RIGHTEOUSNESS; and all these things shall be added unto you.

And, having made peace through the blood…

View original post 708 more words

Posted in Uncategorized | Leave a comment

Switch On Your Brain; Neuroscientist Dr. Leaf

Guest Post

Dr. Caroline Leaf

To

me
Today at 8:18 AM
Posted in Uncategorized | Leave a comment

GLOBALIZATION; OPERATIVE WORD FOR ONE WORLD GOVERNMENT

A one world government is coming whether we like it or not; it’s in its infantile stage of development at this time. I believe over all that it is going to be a good thing for under developed nations; helping the people with simple fundamental needs such as food and water. My only concern is that it appears to be anti-religious, and it is subtly moving to eliminate religious institutions. I am positive that any attempt to destroy the people’s faith is a bad move because the beast is soothed and pacified by the Living Word of God regardless of what the secularist says. Without faith principalities tend to have show-downs as opposed to peaceful resolves.

For we wrestle not against flesh and blood, but against principalities, against powers, against the rulers of the darkness of this world, against spiritual wickedness in high places.

Man has not developed to a point that they can become our gods. The old saying that absolute power corrupts absolutely holds very truth in this case. Man’s governing is always conditional, and the hunger for power always prevails.

But lay up for yourselves treasures in heaven, where neither moth nor rust doth corrupt, and where thieves do not break through nor steal:

Sell that ye have, and give alms; provide yourselves bags which wax not old, a treasure in the heavens that faileth not, where no thief approacheth, neither moth corrupteth.
Little children, it is the last time: and as ye have heard that antichrist shall come, even now are there many antichrists; whereby we know that it is the last time.

Who is a liar but he that denieth that Jesus is the Christ? He is antichrist,thatdenieth the Father and the Son.

And every spirit that confesseth not that Jesus Christ is come in the flesh is not of God: and this is that spirit of antichrist, whereof ye have heard that it should come; and even now already is it in the world.
But when ye shall see the abomination of desolation, spoken of by Daniel the prophet, standing where it ought not, (let him that readeth understand,) then let them that be in Judaea flee to the mountains:
 The dollar has been the standard for all transactions on Earth. Recently, it has been devalued purposely in order to drop the dollar for a universal monetary unit. The Euro is an attempt to unify Europe’s currency. I am sure that all currency is soon to be unified as an electronic unit as a part of the globalization movement. Corporations are moving jobs into foreign countries in order to integrate big businesses; thereby, promoting the one source of livelihood for all people.
 It appears that the Mid Eastern Nations are the most opposed to globalization because of the Muslin faith at face value, but in reality it’s the leaders who are inciting rebellion because they feel as if they are going to lose political power. It is believed that the populus would welcome the Western material standards. Political struggles shall not be avoidable. Who is going to be the man? AntiChrist? Eventually, the supreme lead shall exercise his muscles.
America is the strongest superpower on Earth and stands the tallest. America has been lowing its head to appear closer to less fortunate nations. America’s future need for natural resources is apparant at this time. This would suggest that the first world leader is not going to be American. As globalization expands natural resources shall becomes available to all nation more readily; shared technology shall aid in such ventures.
Am I pro globalization or not? I must admit that I am somewhat indifferent; the bible says that it shall happen. My main concern is preservation of the faith which is Christian.
*** Will Myers
Posted in Uncategorized | Leave a comment

GOD PLACED HIS PERFECTION IN THE ESSENCE OF THINGS WHICH DIRECTED THE GENESIS OF MAN’S KNOWLEDGE

Isaiah 28:16 Therefore thus saith the Lord God, Behold, I lay in Zion for a foundation a stone, a tried stone, a precious corner stone, a sure foundation: he that believeth shall not make haste (Zion mean “in the essence of things”).

Romans 1:20 For the invisible things of him from the creation of the world are clearly seen, being understood by the things that are made, even his eternal power and Godhead; so that they are without excuse:

Refer to prior articles: UspaceVspace product=QV(The way God made things to work; laws and principles). Each and everything of a human is in this form. The mind is a potentiality (Gives probabilities) of the brain which facilitates for routine functions.

Matthew 6:33 But seek ye first the kingdom of God, and his RIGHTEOUSNESS; and all these things shall be added unto you.

And, having made peace through the blood of his cross, by him to reconcileall things unto himself; by him, I say, whether they be things in earth, or things in heaven.

Matthew 5:48 Be ye therefore PERFECT, even as your Father which is in heaven is perfect.

Romans 1:17 For therein is the RIGHTEOUSNESS of God revealed from faith to faith: as it is written, The just shall live by faith.

Romans 3:21 But now the RIGHTEOUSNESS of God without the law is manifested, being witnessed by the law and the prophets;

The Life of Uspace is the Spirit of Truth Who proceeds from God in the world.

Romans 3:22 Even the RIGHTEOUSNESS of God which is by faith of Jesus Christ unto all and upon all them that believe: for there is no difference:

John 14:17 Even the SPIRIT OF TRUTH; whom the world cannot receive, because it seeth him not, neither knoweth him: but ye know him; for he dwelleth with you, and shall be in you.

John 15:26 But when the COMFORTER is come, whom I will send unto you from the Father, even the Spirit of Truth, which proceedeth from the Father, he shall testify of me:

John 16:13 Howbeit when he, the Spirit of Truth, is come, he will guide you into all truth: for he shall not speak of himself; but whatsoever he shall hear, that shall he speak: and he will shew you things to come.

All things were made by him; and without him was not any thing made that was made.

For by him were all things created, that are in heaven, and that are in earth, visible and invisible, whether they be thrones, or dominions, or principalities, or powers: all things were created by him, and for him:

Through faith we understand that the worlds were framed by the word of God, so that things which are seen were not made of things which do appear.

And he is before all things, and by him all things consist.

And, having made peace through the blood of his cross, by him to reconcile all things unto himself; by him, I say, whether they be things in earth, or things in heaven.
THE OBSERVER  (S);

For by him were all things created, that are in heaven, and that are in earth, visible and invisible, whether they be thrones, or dominions, or principalities, or powers: all things were created by him, and for him:

And he is before all things, and by him all things consist.

And, having made peace through the blood of his cross, by him to reconcileall things unto himself; by him, I say, whether they be things in earth, or things in heaven.

Uspace = The stone that God laid in the essence of things; His righteousness and perfection. The natural world is submerged in God’s Righteousness (Uspace).

Vspace = The nexus of all things that God made in the natural world. The world is constantly in flux; nothing ever stops; only God can stop everything.

QV = The full finite set of all laws that can be codified physically and spiritually; the way God made things to work. The Vspace is submerged in Uspace, and Uspace is submerged in God Eternal Who imposes on All that exist with Uspace imposing on Vspace.

Ecclesiastes 1:10 Is there any thing whereof it may be said, See, this is new? it hath been already of old time, which was before us.

Matthew 7:12 Therefore all things whatsoever ye would that men should do to you, do ye even so to them: for this is the law and the prophets.

Matthew 22:36-40
Master, which is the great commandment in the law? Jesus said unto him, Thou shalt love the Lord thy God with all thy heart, and with all thy soul, and with all thy mind. This is the first and great commandment. …

Matthew 19:19 honor thy father and thy mother; and, thou shalt love thy neighbor as thyself.’”

Man has always imposed on God and creation; God has always imposed on man and the universe (UspaceVspace product=QV). After zillion time zillions time zillions executions in the form of the God Equation man has arrived at his present knowledge by the imposition of man on the world and God and the economy of his mind as designed by God.

That which hath been is now; and that which is to be hath already been; and God requireth that which is past.
But whoso looketh into the perfect law of liberty, and continueth therein, he being not a forgetful hearer, but a doer of the work, this man shall be blessed in his deed.
But seek ye first the kingdom of God, and his righteousness; and all these things shall be added unto you.
“Science is blind without religion; religion is lame without science”; Albert Einstein.

*** Will Myers

Posted in Uncategorized | 1 Comment

Potentiality Of Any Point In The Universe; God’s Design Imposing On Human Design

God has always imposed on life in the universe and the physical universe without ceasing. The Word of God says listen to every Word that comes from the mouth of God and obey.

At any and every point in the universe including the human mind and body God is imposing on all. We can symbolically represent the phenomenon with the metaphysical equation: UspaceVspace=QV; whereas, Uspace is God’s Righteousness and Perfection; Vspace is the nexus of our dynamic world; QV is the way God made things to work. Science has many laws, but all are from one Potentiality in which we live and have our being.

Therefore thus saith the Lord God, Behold, I lay in Zion for a foundation a stone, a tried stone, a precious corner stone, a sure foundation: he that believeth shall not make haste.

We can symbolically represent man’s learning and developing in the discipline of creation: S is the Observations of man; qv is his precepts which accrues with experience; the process of life:

God Equation Final Draft Nov 23 2013 2a

Romans 1:20 [King James Version (KJV)]

20 For the invisible things of him from the creation of the world are clearly seen, being understood by the things that are made, even his eternal power and Godhead; so that they are without excuse:

The heavens declare the glory of God; and the firmamentsheweth hishandywork.

And the heavens shall declare his righteousness: for God is judge himself.Selah.

The heavens declare his righteousness, and all the people see his glory.
God can be experienced any every where in our conscientious, and daily experiences in the world.
*** Will Myers
Posted in Uncategorized | Leave a comment

THE HUMAN MIND POTENTIALITY IS Uspace; THE RIGHTEOUSNESS OF THE STONE GOD LAID IN THE ESSENCE OF THINGS

We all have unique personalities, and also we have common traits as humans. We have various beliefs and precepts. With all of the variances among humans we have one potentiality at the universal level, “The Righteousness that God placed in the essence of things.” The Life of God’s Righteousness is God’s Spirit of Truth Who proceeds from God in the world.”

As it is written: “See, I lay in Zion a stone that causes people to stumble and a rock that makes them fall, and the one who believes in him will never be put to shame.”
For the invisible things of him from the creation of the world are clearly seen, being understood by the things that are made, even his eternal power and Godhead; so that they are without excuse:
The human mind has been developing for millions of years as they accrued knowledge [UspaceVspace product=QV; the finite capacity of all knowledge]. Man has the ability to develop toward the fullness of knowledge and God’s Righteousness {u-spaceVspace product= qv; human acquiring knowledge }. All knowledge converges to the potential of Uspace which is the complete set of physical and spiritual laws. The Life of Uspace is God’s Spirit of Truth. Jesus is that Life. There is only one potentiality for all humans; there is only one mind

John 16:13

Howbeit when he, the Spirit of truth, is come, he will guide you into all truth: for he shall not speak of himself; but whatsoever he shall hear, that shall he speak: and he will shew you things to come.

Even the Spirit of truth; whom the world cannot receive, because itseeth him not, neither knoweth him: but ye know him; for hedwelleth with you, and shall be in you.

But when the Comforter is come, whom I will send unto you from the Father, even the Spirit of truth, which proceedeth from the Father, he shall testify of me:
But when the Comforter is come, whom I will send unto you from the Father, even the Spirit of truth, which proceedeth from the Father, he shall testify of me:
When the Comforter Who is within each believer meet God”s Spirit of Truth Who is in the world, and become one than one shall experience a taste of eternal life. They shall be conduits for God’s Holy Spirit to work in the world (Comforter + Spirit of Truth = Holy Spirit; whom is Eternal Life from God).
*** Will Myers
Posted in Uncategorized | Leave a comment

Thank God for Hungry Hippos

On one of my ministry trips to Africa I observed hippopotamus footprints along the banks of a river. My guide told me that as soon as the Sun drops low in the sky all the hippos exit the river and spend the evening, night, and dawn hours foraging for food on the land. As soon as the Sun rises much above the horizon, they return to the river once more.

This day-night behavior cycle is critical for hippos’ survival. The ratio of their body mass to their skin surface area is so high that they would overheat during the day unless they remain submerged in the water. Furthermore, their skin is easily sunburned. Thus, hippos seek maximum protection in muddy water deep enough that they can submerge their entire bodies except for the tips of their nostrils.

This behavior, combined with their ornery and highly territorial nature, makes hippos extremely dangerous to humans. Job 40:15–24 describes the behemoth, likely the hippopotamus, as one of most dangerous and difficult to tame nepesh (soulish) animals. Hippos remain so well hidden in Africa’s rivers and lakes that boaters, swimmers, and people doing laundry often don’t realize they have invaded hippo territory until it is too late. To make matters worse (for people at least), crocodiles like to hang out just outside of a hippo’s territory, knowing that if they are patient, the hippo, itself an herbivore, could serve up a free meal.

An understandable reluctance to conduct intensive field research on hippos has, until now, caused biologists and ecologists to miss an important design feature in the African ecosystem. But researchers have recently discovered another important component of hippo behavior: adult hippos defecate an average of 8 kilograms (18 pounds) per day while in the river.1 The excrement sustains huge populations of microbes, which make up the base of the aquatic food chain. In this way, hippos literally support an entire aquatic ecosystem. Their waste transfers important nutrients from the land into the water systems and significantly enhances the biomass and biodiversity of African wildlife and foliage.

This discovery also demonstrates God’s wisdom in designing hippos the way He did. It seems God purposely made these giant mammals sensitive to overheating and sunburn so that they would spend much of their time in water, thus allowing appropriate amounts of nutrients to be transported from the land to lakes and rivers.

During biblical times, hippos inhabited a much larger habitat range. Job 40:23 describes hippos residing in the Jordan River (see my book Hidden Treasures in the Book of Job for more on this passage of Scripture). Now hippos are listed as vulnerable on conservation status lists. Given the important role hippos play in sustaining aquatic ecosystems, we would be wise not only to put an end to hippo poaching but also to help restore their populations and habitat ranges to their previous sizes.

Subjects: Life Design

Dr. Hugh Ross

Reasons to Believe emerged from my passion to research, develop, and proclaim the most powerful new reasons to believe in Christ as Creator, Lord, and Savior and to use those new reasons to reach people for Christ. Read more about Dr. Hugh Ross.

References:

  1. Elizabeth Pennisi, “The River Masters,” Science 346 (November 14, 2014): 802–5.
Posted in Uncategorized | Leave a comment